Cheap flights from Manila to Tokyo from C$ 162

If you aren’t able to travel to Tokyo during the month of September, then flying in June is also cheap. Prices for this month can be found on momondo for an average of C$ 244.

Our data shows that Thursday is the least expensive day to fly to Tokyo. Tickets to fly out on this day can be as low as C$ 285. If your travel schedule is flexible, try to avoid departing on a Tuesday because tickets tend to average around C$ 409. These prices are subject to change though, so be sure to set up a Price Alert for flights to Tokyo.

According to our data, the cheapest time of day to fly to Tokyo is in the morning. momondo users have found flights departing from Manila to Tokyo in the morning for as low as C$ 297. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. Flights to Tokyo are more costly at noon, with an average ticket price of C$ 359. Departure times at noon fall within the peak daily travel times, which is why tickets can be more expensive.

Fly from Manila Ninoy Aquino Intl to Tokyo Narita for the best Manila Ninoy Aquino Intl - Tokyo flight prices

You are more likely to see cheaper flights to Tokyo from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo for around C$ 292 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo from Manila for as low as C$ 249 on momondo.

There are 3 cabin classes available to choose from on Manila Ninoy Aquino Intl to Tokyo flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

No. A direct flight is the cheapest option for a flight between Manila to Tokyo.

As of March 2026, prices for Manila to Tokyo flights are approximately 10% cheaper when compared to flights at the same time last year.

Jetstar Japan, Philippines AirAsia, and VietJet Air are the most popular carriers operating from Manila Ninoy Aquino Intl to Tokyo

Cebu Pacific, Philippines AirAsia and Philippine Airlines are the top three most popular airlines that fly to Tokyo from Manila according to our data. Cebu Pacific is the first choice among our users, with 34% of people opting to fly with this airline when travelling to Tokyo. Keep in mind that there are 6 different airlines that fly to Tokyo on a routine basis, so you have a few additional options to choose from.

Historically, on average around 10% of flights between Manila and Tokyo have experienced a delay on any given week. The average delay length over the past 12 months has been 126 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights departing at night have, in the past, seen delays more frequently in comparison.

Thursday is statistically the day of the week that experiences the fewest delays on this flight route. Friday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA has had the least delays on this route over the last 12 months, with about 6% of their flights experiencing any sort of delay.

As of March 2026, 14 flights take off from Manila and land in Tokyo each day. The most common flight departure time for this route is 9:00a.m., with 50% of daily flights taking off at noon.

As of March 2026, there are 101 flights per week flying from Manila to Tokyo. The most common day of the week flights depart is Wed, with 16% of flights taking off on this day.